Utilities

Standalone tools for sequence retrieval, HMM search, accession lookup, domain analysis, and branch extraction.

Standard Sequence Retrieval

UniProt Version

Taxonomy IDs (comma separated)

Proteome ID (optional)

GO ID (optional)

Pfam ID (optional)

HMM Hit Retrieval

UniProt Version

HMM Name or Accession

Taxonomy Filter (optional, comma separated)

E-value cutoff (optional)

Accession / Protein Name Lookup

UniProt Version

Accessions or Protein names

Domain Coordinate Lookup

UniProt Version

E-value cutoff (optional)

Accessions or Protein names

GO Term → HMM Domain Profiles

UniProt Version

GO Term

E-value cutoff (optional)

Extract Downloaded Branch

In the ETE4 Interactive Viewer, right-click a clade root → Download branch as newick. Upload that file here to extract accessions and fetch their sequences.

UniProt Version

Branch Newick file

Database Info